Our group has developed a number of software tools that simplify the analysis of high-throughput sequencing data, largely focused on visualisation.

BRIG – BLAST Ring Image Generator
Author/contact: Nabil-Fareed Alikhan & Scott Beatson*
Code: https://sourceforge.net/projects/brig/
Paper: Alikhan et al. (2011) BMC Genomics, 12


Image: Totsika et al. (2011) PLoS ONE, 6

Easyfig – Easy genome comparison figures
Author/contact: Mitchell Sullivan & Scott Beatson*
Code: http://mjsull.github.io/Easyfig/
Paper: Sullivan et al. (2011) Bioinformatics, 27

Contiguity – Contig adjacency graph construction & visualisation
Author/contact: Mitchell Sullivan & Scott Beatson*
Code: http://mjsull.github.io/Contiguity/
Paper: Sullivan et al. (2015) PeerJ PrePrints, 3

HAIviz – Healthcare Associated Infections Visualization Tool
Author/contact: Budi Permana & Scott Beatson*
HAIviz web: http://haiviz.beatsonlab.com/

SeqFindR – Informative genomic feature plots
Author/contact: Mitchell Stanton-Cook & Scott Beatson*
Code: https://github.com/mscook/SeqFindR


Image: Petty et al. (2014) PNAS, 111

binCrisp – detect CRISPR sequences
Author/contact: Nabil-Fareed Alikhan & Scott Beatson*
Code: https://github.com/happykhan/binCrisp